Scaffold Ga0187844_10004570

Overview

Basic Information

• Taxon OID: 3300018868
• Scaffold ID: Ga0187844_10004570
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8711
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187844_1000457010	F005584	AGGAG	MAGSIPTSYFATDLSNMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0187844_100045705	F003049	GGA	MKNAKQIIGCRKAKKGEDTKGLGIITFGKSSIDKTKYVLVDIAYDDKAGKELYEAGMLSLKHDPEAVIEYAIKKALTSMAKCKR
Ga0187844_100045707	F030060	N/A	MTKGVITSELPEIHWEHLKVAGGRVLDLGCAFWTESERQEASGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDAWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFLAWFDSIGFECYRHDSVSFCAEISVIYGRLKC