Scaffold Ga0193363_1001004

Overview

Basic Information

• Taxon OID: 3300018857
• Scaffold ID: Ga0193363_1001004
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_111 - TARA_N000001828 (ERX1789640-ERR1719290)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3141
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_111
• Coordinates
  • Lat. (^o): -16.9741
  • Long. (^o): -100.6683
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193363_10010042	F085090	AGGAG	VCQDLLGWLVSLDQLASLDHLVYRAALERLDHRDSLEPRATVVSLAFRVFLDPLDLKDRRDLQAKMERTESQVQWAGAVLQDLMDPSVVWATLVNQDQEDHQARKAREVHLASLVLLGLLALQARAMEWTWLL
Ga0193363_10010043	F094857	GGA	VKLADRDLLERPGCPVKRALMDQEDPQAKEDHRDLKACQAWKAVREPLVLMDLMDRLDHLDQMDLLGIEEFLVYQVLLAQLELQANKDHKEKGEILASQESRALRDHLGLLVLLGLLEREVSGVRRVHQESRELQGWAVDLVTRVHLVQQE
Ga0193363_10010045	F104391	N/A	VNLDHLDPRDLLDTKVPLGWLVYLVSAEFQGLKVLRGEEVIQAFLDQLALMAEQARGVNKALLVLQDPLARLEVLEIQDRQGLLENRDQLV