Scaffold Ga0193120_1008498

Overview

Basic Information

• Taxon OID: 3300018856
• Scaffold ID: Ga0193120_1008498
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_009 - TARA_X000001006 (ERX1782473-ERR1712200)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1878
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Balearic Sea: TARA_009
• Coordinates
  • Lat. (^o): 39.0856
  • Long. (^o): 5.7927
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095524	Metatranscriptome	105	Y
F104521	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193120_10084981	F095524	N/A	MSRAPSSSEASKYPPTEFSLKYTKVLAPNGKLIPPDQVFGEGGLFDKDVEEKTKLAFKVTMKKLEKYNTASEFNKEHLKTAKVDQVVECFPNTLLKLLPNTIQKTKWSKKSKEVENWDIWWSMHEKILQPLRAQAEVIHKWWDFTGKPDPGVEEITNGLKRLVTGCSPTQ
Ga0193120_10084982	F104521	N/A	MTIGKVISAYTPKRKKDKPKSIHLIGTDTPEATMIYAGFYTEILSCNPLHPIKLTMVSPSAGNRQLSKDCSPSNPMLINDRCKLTAWDGLYHDFWERFIQAKKVEVPDIVMAIHPHLEGEFWGPTVDLLLDENVVTAFTAFNEEHFKQALERLDYVFAKYIFKVISSIF