Scaffold Ga0192877_1017482

Overview

Basic Information

• Taxon OID: 3300018834
• Scaffold ID: Ga0192877_1017482
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000746 (ERX1789722-ERR1719319)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2171
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_067
• Coordinates
  • Lat. (^o): -32.1745
  • Long. (^o): 17.6991
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039648	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192877_10174822	F039648	AGG	VVLYDATAKKETVKISNTAAPAQDNSDYQLFVNGKEQICVMQSAPEAPSGRHINVYTYSGSWLYQINLDLYKYGLSRDESVCIYTNAAFLAAADSKRFVLFNVRDGAFVGVIQIPNHLERNKGKDEKDCMFEQTGLGLFIFDENKLIAVHDYERSFPAVLDIYKFW