Scaffold Ga0194242_10000024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194242_10000024

Scaffold Ga0194242_10000024

Overview

Basic Information
Taxon OID	3300018818 Open in IMG/M
Scaffold ID	Ga0194242_10000024 Open in IMG/M
Source Dataset Name	Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1086442-ERR1007415)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1975
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063774	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194242_100000241	F063774	AGTAG	MLYMRCRCEQLLSASRKRLEAARICAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERGGVNLDHFGEEIRFENDSVLLAMVGIIATRAESAEA

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