NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187845_1066057

Scaffold Ga0187845_1066057


Overview

Basic Information
Taxon OID3300018815 Open in IMG/M
Scaffold IDGa0187845_1066057 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1242
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015354Metagenome / Metatranscriptome255Y
F023295Metagenome / Metatranscriptome210Y
F035672Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0187845_10660572F023295AGGAGVLLSMLHGIGCQTKVILVPDGQPVMLAESVKAKVYAFDSAGKPVPSSNKVVLPAGWYVLPRK
Ga0187845_10660573F015354GGAMNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAIVTIAGVVLSMLKNKKAATPPAA
Ga0187845_10660574F035672N/ADLGIGVGGPAGGLFIASIVPDPIMANLSVTLGSLAALTVIIKNVLDIWNNRNK

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