NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187845_1038024

Scaffold Ga0187845_1038024


Overview

Basic Information
Taxon OID3300018815 Open in IMG/M
Scaffold IDGa0187845_1038024 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1722
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008752Metagenome / Metatranscriptome328Y
F033792Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0187845_10380242F033792GGAMSISDQNEHCIEDLYAKYLQFTAVMLEEYKDIEIAGIMVTQALSMYRTVLPEEDYQRMVKSIYERRNDVKSFD
Ga0187845_10380243F008752N/AMKEEMMSKASTELEPQTPAEGILKRGQWGDAMTYQVTCECHDANHDHNVWVEADDHRVTVTTYTTQKSQWWSLNRWQTIWILLTKGYVEHEANIIMTEQQALNYAETLKKAIKDVKNFKQ

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