Scaffold Ga0187845_1019997

Overview

Basic Information

• Taxon OID: 3300018815
• Scaffold ID: Ga0187845_1019997
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2554
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009066	Metagenome	323	Y
F026867	Metagenome	196	Y
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187845_10199972	F026867	GAG	MNSVRLNDTAMNLRKQDRALSLRQLGAAYGLGYVRIKQMRALSGFPLVAGKVIPSDFDQWRLAHTGLNLPRPADRLRNAVGKAHALTSRSDSRVSWRQIANTLKAEAWLRELREGNGSSA
Ga0187845_10199974	F048834	AGGAGG	MAIPGVDWAAALDAYVAGDREEVVPPGWFTKIDIAKLWGKTPVYTNKVLTRMMKSGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPAKSRKS
Ga0187845_10199976	F009066	GGAG	VSPEHEKHLAGILSDLVKDVDAKYRKGQDQHGGALWRRPVWKDAWDEILDLCTYHHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK