NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187845_1008529

Scaffold Ga0187845_1008529


Overview

Basic Information
Taxon OID3300018815 Open in IMG/M
Scaffold IDGa0187845_1008529 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4362
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007467Metagenome / Metatranscriptome350Y
F052470Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0187845_10085295F007467N/AMKDKDAWDKFEDGLQNAKSFDEAVAWVKANQEIVEKLTIRAMINKFNRDISHANKTWRN
Ga0187845_10085297F052470AGGAGMGLTISESQKMERKLPEAGATVGVLYSLVDLGHQETNFDNQKKWTPKVRLTFELPDQTDEFEVVENGKTTKVSKPMVVSIEQ

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