NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187845_1003588

Scaffold Ga0187845_1003588


Overview

Basic Information
Taxon OID3300018815 Open in IMG/M
Scaffold IDGa0187845_1003588 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_68
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7765
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F004760Metagenome / Metatranscriptome424N
F008071Metagenome339Y
F010603Metagenome / Metatranscriptome301Y
F047565Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0187845_10035881F008071N/AMTAIEYVEASGVPESRWPNFKEWFGWYEKNNLVGVVKDGNEVVGVAIARAVDASQDVAHYKHDYSAPDAFVDLTVTSIDGKPNARSLLAMKCLLSILWDELGPRRSLIFNRNG
Ga0187845_100358810F010603AGGAGMASEFQRSPIKAKNKAVRIDGANFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0187845_100358811F004760AGGAMPVYQYEDTRNGKVVELEKVVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSQFTPDSIKRATLRRKKYGI
Ga0187845_10035883F000635AGCAGGMTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAELDLYPRFATSGTIPLRVIEKLKCITRSNYIVDFPPSNEALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANTDLSAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0187845_10035886F047565AGGMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRFNG
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