Scaffold Ga0192872_1020555

Overview

Basic Information

• Taxon OID: 3300018813
• Scaffold ID: Ga0192872_1020555
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000809 (ERX1782297-ERR1712172)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_066
• Coordinates
  • Lat. (^o): -34.9449
  • Long. (^o): 17.9189
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192872_10205551	F014356	GGAG	VEYIEEPAEVCVPTLETKCDQEDGGQTLELRTEEKCQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVESHWAEVCHQETICLNHAKPSYGAPPAYCHEEIHETCALEPALVPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEKGEPACQETLLQLPQQACLQKIERVNTVYTAPEKVSYSG
Ga0192872_10205552	F035620	AGGAG	MGNWGVIGNLPGWSVVGSCLVVDKGRLSVGNMLVVDCSYRSRMVDLVVGSNRGSYDGSLVGSVAMADAGERASNSVGCVEVALGAGQGSQAGADKQDRLMTEHGCPSSNLNRLSNPH