Scaffold Ga0192865_10052310

Overview

Basic Information

• Taxon OID: 3300018795
• Scaffold ID: Ga0192865_10052310
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000791 (ERX1782279-ERR1712192)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 722
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_066
• Coordinates
  • Lat. (^o): -34.8901
  • Long. (^o): 18.0459
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008557	Metagenome / Metatranscriptome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192865_100523101	F008557	GAGG	VPAFAEQVTPVTLAVKEVVDNDYCFDRVLTICEETNTVVQREICTYVYEREDVVTDCQTTQVTYDEKSETMKVTACGVQAPAYGYAADPYHGEHQVCHEEYQTQAYKVPLVTAPLTVQCSLAYPAPKEVCVTKDITITEVKCEDKVENKCFNVAKFVDATNTVDQKEIIIGEPSC