NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0192865_10030958

Scaffold Ga0192865_10030958


Overview

Basic Information
Taxon OID3300018795 Open in IMG/M
Scaffold IDGa0192865_10030958 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_066 - TARA_N000000791 (ERX1782279-ERR1712192)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_066
CoordinatesLat. (o)-34.8901Long. (o)18.0459Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066305Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0192865_100309581F066305N/AMLLLAAFALTTSFLHQVTSFSTGRCREEQLLKILTDVKSCSANLRWSSDYCQKHAQIENCLERAFNACFSNSVVQKLVRGEKARLRLKIESEWGNKIQVEELEKLFKGCTYIADRPPPGLLQRLHWVDFVRTDGNCGYKAKEEVKRWISFEAPLTDSSNLPNCLSEKEANFVLEEMRANVEKAANLEAKNSRQREISVPDPSPRRSSTSSVHNSIKVFLPLLLIMIFI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.