Scaffold Ga0187842_1031741

Overview

Basic Information

• Taxon OID: 3300018790
• Scaffold ID: Ga0187842_1031741
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F101128	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187842_10317412	F023833	AGGA	MKSHSDQLQDIINDAMSKAAALERERCAELVQRLADGTEDQVIQDILNEVVVALRRLTDE
Ga0187842_10317413	F033350	GGAGG	MSVDVDVPKVKWSMLEWKTIEEKPNNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0187842_10317415	F023585	AGGA	MSVKRLKLVDEFHAIVSKRLKDLFKDFDHAKRENYKDIVSHLDYSHRITKELLERAKKYQKIDMEKAKK
Ga0187842_10317417	F101128	GAGG	MRRDSFWFPFEPNRWLANEKLALVSLASKGLWIHLLCLMYKANASGKLTINGHIPTPEQISRMVGQDAKPLLQELEVAGVYEL