Scaffold Ga0187842_1024563

Overview

Basic Information

• Taxon OID: 3300018790
• Scaffold ID: Ga0187842_1024563
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1978
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y
F088194	Metagenome / Metatranscriptome	109	Y
F102437	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187842_10245631	F026209	N/A	YTMGMMNKEVTNEIYDDNTGEWRKVTVPAIGGIKWHKREQIGDQKQSAYYDHSFYKVPFHGPYDQGRIRNALNKMYPARFNKFGGYTTVSTVEQLDDQHIKVELCYHIGD
Ga0187842_10245632	F102437	AGGAG	MTSKLRAFEDTVLSVREPRELKGSLVCSIQDSDIPITDKRKLIIAIDRCMTIKDIQRLFYNALLKFEGMGVI
Ga0187842_10245634	F088194	N/A	MMNEVAATSEETTAYALGSTIGTLLNLKRMVEQNMTDYSSNLEGMRGLHPMWSKSELMDQFDRAINKLNAITYPYKY
Ga0187842_10245636	F036073	GAGG	MSMAQETTGYETPYNADLHCKKIAWMVANSPDWDYETQTLEQYLETVPEYPSDEQVKDFNHLYVAPFVPVKKEKCYEGEQVNEAS
Ga0187842_10245637	F076813	AGGAG	MKHRNQLDPNGDIRDIFAAMAMQGLMNQDAATPAWVATQAYRYADAMLAVREEVSHNEENNK