Scaffold Ga0187842_1012056

Overview

Basic Information

• Taxon OID: 3300018790
• Scaffold ID: Ga0187842_1012056
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3006
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026209	Metagenome / Metatranscriptome	198	Y
F036073	Metagenome / Metatranscriptome	170	Y
F076813	Metagenome / Metatranscriptome	117	Y
F088194	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187842_10120562	F076813	AGGAG	MNKFKDHDQRGELRDLFAAAAMISLINQDAATPKWVAHQAYKYADVMLECRDGVSHNEDI
Ga0187842_10120563	F036073	GGAG	MNETETMEPTKPYDADLHCKKIAWMVKHSPDWDYQNQTLEQYLETVPDYPTDEQVQDFNHLWVEPFVPLKKNKPYEGEQINEQV
Ga0187842_10120565	F088194	N/A	MNEIATTSEETTAYALGTSIGILMNLKRMVEQNMTDYGNCLEGVRGLHPMWGKQTLMREFDRALQVIDGIKYPYKY
Ga0187842_10120568	F026209	N/A	MNKQITNEVYDDNAGEWRQVTMPAVGGIKWEKRESLGDTKQSAYYDHTYYKVPFYGPYDQGRIHKALSRLYPARFNKFGGYTTVSTVEQLDDQHLKVELCYHIGD