Basic Information | |
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Taxon OID | 3300018790 Open in IMG/M |
Scaffold ID | Ga0187842_1012033 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3012 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026209 | Metagenome / Metatranscriptome | 198 | Y |
F036073 | Metagenome / Metatranscriptome | 170 | Y |
F076813 | Metagenome / Metatranscriptome | 117 | Y |
F088194 | Metagenome / Metatranscriptome | 109 | Y |
F102437 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0187842_10120332 | F076813 | AGGAG | MSKFKDHDQRAELRDLFAALAMQSLINQDAATHTWVAHQAYKYADAMLDVRDAVSHNEEI |
Ga0187842_10120333 | F036073 | AGGAG | MNETETMEPTKPYDADLHCKKIAWMVANGPDWDIENQTLEQYLETSADYPTDEQVAGFNHLWVEPFVPFKKEKPYEGEQVNEQV |
Ga0187842_10120335 | F088194 | N/A | MMNEVAATSEETTAYALGHTIATLLNLKRMVNQNMTDYSNNLEGMRGMIPMWSKSELMEQFDRAINKLNTIQYPYKY |
Ga0187842_10120338 | F102437 | AGGAG | MTSKLRAFEDTVLSVREPRELKGSLVCSIQDSDIPIIDKRKLIIAIDRCNTINDLQRLFYNALLKFEGHGVL |
Ga0187842_10120339 | F026209 | N/A | MGMMNKEVTNEIYDDNTGEWRQVTIPAVGGIKWEKRESLGDTKQSAYYDHSFYKVPFYGPYDQGRIHKALSRLYPARFNKFGGYTTVSTVEQLDDQHLKVELCYHIGD |
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