Scaffold Ga0187842_1006836

Overview

Basic Information

• Taxon OID: 3300018790
• Scaffold ID: Ga0187842_1006836
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4270
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003962	Metagenome / Metatranscriptome	459	Y
F011208	Metagenome	293	N
F065536	Metagenome	127	Y
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187842_10068361	F003962	N/A	SHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDDFDTDEVDDQ
Ga0187842_100683610	F065536	N/A	MDENGASPSAPIEKAKNGREIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDIQLAGEKSWQAKAWLAERIYNHGVPSTRLQVSQDVTHGISGNLAQLLAGIRGRKQITASPEKRQIESSHNYIDIQPVATKLENHLSNNKYCINKTNSVEQQQDAQAKTPKPRHKRMKLRKPRAESLAKYPPTTTPPA
Ga0187842_10068362	F011208	AGGA	MTEDQIIKAYLSRLGKKGGSVIGPSKARKLSREHYAKVGKSQRERWDKFRRERQTEAQASKR
Ga0187842_10068364	F098901	AGGA	MKKKIAKRKYKVEYKQTETFIVDVYASNQDQAEILACKRFDAGDYQEIGDCEVVVNQVYDVTNTEDPFNP