NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187842_1006836

Scaffold Ga0187842_1006836


Overview

Basic Information
Taxon OID3300018790 Open in IMG/M
Scaffold IDGa0187842_1006836 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4270
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003962Metagenome / Metatranscriptome459Y
F011208Metagenome293N
F065536Metagenome127Y
F098901Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187842_10068361F003962N/ASHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDDFDTDEVDDQ
Ga0187842_100683610F065536N/AMDENGASPSAPIEKAKNGREIFTDKIADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDIQLAGEKSWQAKAWLAERIYNHGVPSTRLQVSQDVTHGISGNLAQLLAGIRGRKQITASPEKRQIESSHNYIDIQPVATKLENHLSNNKYCINKTNSVEQQQDAQAKTPKPRHKRMKLRKPRAESLAKYPPTTTPPA
Ga0187842_10068362F011208AGGAMTEDQIIKAYLSRLGKKGGSVIGPSKARKLSREHYAKVGKSQRERWDKFRRERQTEAQASKR
Ga0187842_10068364F098901AGGAMKKKIAKRKYKVEYKQTETFIVDVYASNQDQAEILACKRFDAGDYQEIGDCEVVVNQVYDVTNTEDPFNP

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