NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187842_1003082

Scaffold Ga0187842_1003082


Overview

Basic Information
Taxon OID3300018790 Open in IMG/M
Scaffold IDGa0187842_1003082 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7018
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F008071Metagenome339Y
F010449Metagenome / Metatranscriptome303N
F012569Metagenome / Metatranscriptome279N

Sequences

Protein IDFamilyRBSSequence
Ga0187842_100308211F012569N/AMSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG
Ga0187842_10030823F008071N/AMTAIEYVEASGVPESRWPNFKEWFGWYEKNNLVGVVKDGNEVVGVAIARAVDASQDVAHYKHDYSAPDAFVDLTVTSIDGKPNARSLLAMKCLLSILWDELGPRRSLIFNRNGIRKQYDYMKFMRKVMV
Ga0187842_10030825F000635AGCAGGMTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDTEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAELDLYPRLATSGTIPLRVIEKLKCITRSNYIVDFPPSNEALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANTDLSAMANYELSQVGGVKQITPQSLGELTIEEMFSA
Ga0187842_10030828F010449GGGGGMSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRFNG
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