Scaffold Ga0187842_1002829

Overview

Basic Information

• Taxon OID: 3300018790
• Scaffold ID: Ga0187842_1002829
• Source Dataset Name: Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7383
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.008
  • Long. (^o): -89.701
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F027439	Metagenome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187842_100282911	F003962	AGAAGG	LQSDREQLKASHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSFEVFEAQWNGLTEQVKRLSGFFESHQKALQSLQDSIPDDFDTDEVDDQ
Ga0187842_10028292	F027439	AGGAG	VKSIYKYARLEVNALAEMLDKNACQPGQLLESNVSPLAWIMNQMLYDKFHGHGWVLDLLAGSFVKQKENKQCH
Ga0187842_10028293	F004010	AGGAG	MPLGKNVSKNMSELAADNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS
Ga0187842_10028294	F002826	AGG	MRVECKDRLKWSRDMLLIARDKLAVERDRVSHGHAIDLIQIITMVDAAALIAKEILESE