NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188848_1027002

Scaffold Ga0188848_1027002


Overview

Basic Information
Taxon OID3300018775 Open in IMG/M
Scaffold IDGa0188848_1027002 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)607
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005147Metagenome / Metatranscriptome410Y
F032200Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0188848_10270021F032200N/AVTEGILIDALKLWQQEFIGEIRKMEADGKRVMFHPNWTAVMLREFGIEFGVEELTNVEPIND
Ga0188848_10270022F005147N/AMKAKGIKAMMSALEKAGVNVCGTTDEFFSGGYDNKGIWVAADHTPHLFDYYNSEWLDTFGVNPSINKLVEGNGWYFEWYDPGTMMVWKN

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