NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188848_1002311

Scaffold Ga0188848_1002311


Overview

Basic Information
Taxon OID3300018775 Open in IMG/M
Scaffold IDGa0188848_1002311 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2199
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022639Metagenome / Metatranscriptome213N
F049593Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0188848_10023112F049593AGGAMDKELQEYYETLLDLFSSKGWKQYIEDISDNMEILQDITTIPDEKQFWFRRGQIEALQRVLSYESAIKNSYEDFEREQYA
Ga0188848_10023113F022639GAGMPKRIYEFICSNDHITEVYIDSELRTTECKVCDQPAIRIISKPLVKLEGVTGDFPGAAMQWERKRNEKIKQEQKSAAE

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