NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188848_1001291

Scaffold Ga0188848_1001291


Overview

Basic Information
Taxon OID3300018775 Open in IMG/M
Scaffold IDGa0188848_1001291 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2930
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028350Metagenome / Metatranscriptome192Y
F079995Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0188848_10012918F079995AGCAGGMKHFISHWELQPDTQNTWASVNCANGRAEIIKHMGCWMLEIRFDSGKSHVSSHNTRDEAMRQAEYLSSWAVEFV
Ga0188848_10012919F028350AGGMRIKPNSVNPIARALLQTNRRRPQAVPDKTKYNRKKEKDLANQTRSNEELENPKG

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