Scaffold Ga0188848_1000846

Overview

Basic Information

• Taxon OID: 3300018775
• Scaffold ID: Ga0188848_1000846
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3727
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064881	Metagenome / Metatranscriptome	128	N
F093527	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188848_10008462	F093527	GGA	MELVIKMPCHVHGVPRNAGDMVILSTAEARQFISSGHAEEIKMDPKPLSKKAVEKVAKR
Ga0188848_10008463	F064881	GAG	MSLEFDSDFDGYFDVLGHGVSCTYTPLGGSSVTIKVILDQEYFEIPAQTVSVEGLQPMVYGKAKDLRNASHGDTLVFADITDLSGNVLKDATNYKVVNVQPDNTGVVALALEAQ