Scaffold Ga0188848_1000816

Overview

Basic Information

• Taxon OID: 3300018775
• Scaffold ID: Ga0188848_1000816
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3773
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013639	Metagenome / Metatranscriptome	269	Y
F044458	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188848_10008163	F013639	GAG	MNIDKEKLKEKIKEGKSSHDIAMAYDVHPSTIRRKAKKMGLKFEAKSHWRNK
Ga0188848_10008167	F044458	N/A	MKKEEKKKHSNETIKLLQKYQKFKHEFHTKWGDQKRLDRLVGVDFRVKFMKAEQMFKESVLSNVDTTTVKMIDMMYRAYDALEEEMQNLGYKPLEPHIRCFNWDGQVWYVTDMDFEIPRAMQLYKKEGDIKFVSVQELLRTVPKELMDIRLDIAMMFEGSKFVRIDRK