NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188848_1000424

Scaffold Ga0188848_1000424


Overview

Basic Information
Taxon OID3300018775 Open in IMG/M
Scaffold IDGa0188848_1000424 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5572
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014380Metagenome / Metatranscriptome263Y
F072331Metagenome / Metatranscriptome121N
F093878Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0188848_10004246F072331N/ALKPKKYKDIIPIVAEELNLSQQMVLDVTSYYWQEIRKSLSSLKHSRIHITNLGDFTIKHWKLDDKIDMLEKFKENFRQKGLQEIVTRFRTDETLFDLKAIKDLMEEEKQRKDFIKLHKTKTDESKREHNTNLESKGPDIGGNS
Ga0188848_10004247F014380N/AMALVNQVDKRVKMTTWQIVKYQILTHCYLFEIPVSEADLNCLTLLALEGNQELTHFCNKAYDKKIFSSTQSVRNCLTKAERKGLIVKEGKNKKKISINSSLKLHAQGNILLDYKFLSVEA
Ga0188848_10004249F093878N/AMNKKENMEQEEQKVPTKEEIIAFIKEQIEVKTVQLELQELNTGLASSRAEELKALAFIAQMTQQGGGKPEGTPHTITQEDMDNNPELVEEGIKVGDEVIIPSMPPTEKRSLKKDK
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