NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188848_1000213

Scaffold Ga0188848_1000213


Overview

Basic Information
Taxon OID3300018775 Open in IMG/M
Scaffold IDGa0188848_1000213 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7803
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030766Metagenome / Metatranscriptome184Y
F031491Metagenome / Metatranscriptome182Y
F041189Metagenome / Metatranscriptome160Y
F066792Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0188848_10002132F041189N/AMFSTKGQEVKTTGGTAKSLQTGVVYAHIYSGQIRTSKKGDKKTLELILEGPASDGFEGWAIDKNDLEGPKFTGQSSRVSATIWTDQFNETNVTKNEIMFKIAVIASELGLRDQIDNISASNLEDWVEKAMIMLKGNNLYWFLKGTEEEYNGKTIIKLSLPKYKFVSADEAKLDKFDKNNQYHYKALQNKPVASFEPANSDFDM
Ga0188848_10002134F031491N/AMTSNTPQTMDIKELKKLKLEAVRDYHQDLIDDLDIPRTDFNMKMPFYDKHGRMVVGIFSSEFRKDKGFFFELITRDLSPADADRKVYRVPVSGSYEEEYELNEKGSYLVPLEELRVVNPSSVAIKKTGMFGIDTEALPSSLPKTPMQAYKAPATMEDAPYSDMTIRDYYAIQTGKPVSSKIWLNELIKTTK
Ga0188848_10002138F030766N/AMAKKFYAQKDALGFPIPGTMMSVTTPRSIPSDSILIPAENVTAGGGKSVVNQPSGLRYFVRRDDKGGIVPNTLTISLKKPFGSVYEFKLLK
Ga0188848_10002139F066792AGGAMFKENPSMTAIKVWIFPTLVSLVSLLIWNDVNEIKSDVKALMAQSNIDKTRIDNLERQLFKSASLPTPPVKPFADYQELVAILPKNKFNTVIYEY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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