Scaffold Ga0188848

Basic Information
Taxon OID	3300018775 Open in IMG/M
Scaffold ID	Ga0188848_1000171 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018775 Open in IMG/M

Scaffold ID

Ga0188848_1000171 Open in IMG/M

Source Dataset Name

Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8

Source Dataset Category

Metatranscriptome

Source Dataset Use Policy

Open

Sequencing Center

J. Craig Venter Institute (JCVI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8698
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (92.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8698

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (92.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	56.1664	Long. (^o)	16.378218	Alt. (m)	Depth (m)	.3
Location on Map

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Source Dataset Sampling Location

Location Name

Baltic Sea

Coordinates

Lat. (^o)

56.1664

Long. (^o)

16.378218

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F021020	Metagenome / Metatranscriptome	221	Y
F029774	Metagenome / Metatranscriptome	187	Y
F042350	Metagenome / Metatranscriptome	158	Y
F062573	Metagenome / Metatranscriptome	130	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188848_100017111	F062573	GGA	MSGDLKEFEVIESKAYIVHAFDEAHALRKFGNYDYVSEGDTWPDVRELGPVNMIGTAPG
Ga0188848_100017116	F042350	GGAG	MPGRESDYERGYLRGVAAMMNLISSDKVKRLDKTNVLQYARELVEAEREREANAPRNY
Ga0188848_100017124	F021020	AGGAG	MSETISLNNSIMTNNYDLNIWDRRGYETEYQEEGWEISVYQYPYTGAQYGSGTFMEDYTIVLTPTEAKRLTLGWGEDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPSYAQLDAYREVG
Ga0188848_10001716	F099390	GAGG	MLSNRVNMTDGYWVSDDTGVSVHGGLDSDGIIDALKLMDIESGEIVGIWESQGISYIDRSYHFRKKDTAMKVAEKFEQISIWDNANSKALDIRYH
Ga0188848_10001717	F002502	AGGA	MENITVGSQFTTQKSGVTGVVQEIVKNANGTSRVLLSVDGQDRWTTVK
Ga0188848_10001718	F029774	GAG	MARSISVKVPTSLLISQIEERIAQIDKDIEEYPAKREAFEKAEEAYKSEVANFVAAYLGENLDKIGYGYEDIIRINTGYVGYRSNGGKVELTFDTDAIVGFPKRPEAPQSPNQNESFGREYTTRKSLLEKNLRILKMTSQEEVNASTYGAIMEII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0188848_1000171

Overview

Ecosystem & Geography

Associated Families

Sequences