Scaffold Ga0193396_1059589

Overview

Basic Information

• Taxon OID: 3300018773
• Scaffold ID: Ga0193396_1059589
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002037 (ERX1789391-ERR1719301)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 587
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_124
• Coordinates
  • Lat. (^o): -9.1504
  • Long. (^o): -140.5216
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098438	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193396_10595891	F098438	N/A	IREAAADRLGLALEGPPAAWGWPAETPFGIEPRRPRMAVIFLIDRTFEGFLQNVVDAVLKLYDKYLEPDDLVGYYGLGDGWIFDVQPKGDDDTTAAALRQQIVDSVEKRGEPEVYSSMETCVEHLSAHVDGGYSKWLVVLTDTVDFQCVNEKNQFDKESPARAEAAVNRVIGRMSAMVGLNLVLLDASGIANFNA