Scaffold Ga0192963_1026522

Overview

Basic Information

• Taxon OID: 3300018762
• Scaffold ID: Ga0192963_1026522
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001006 (ERX1789586-ERR1719157)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Amphiesmenoptera → Lepidoptera → Glossata → Neolepidoptera → Heteroneura → Ditrysia → Obtectomera → Bombycoidea → Bombycidae → Bombycinae → Bombyx → Bombyx mori (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_084
• Coordinates
  • Lat. (^o): -60.2287
  • Long. (^o): -60.6476
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010300	Metatranscriptome	305	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192963_10265221	F010300	N/A	SPSVDHCLLSNTSPKVSKMAKTTGRRNSVACDNAEDKQYVKFLSSFQIEKFTYMFNSFFDDANGDGLLQKEDIDALIERLSKYRGWSAGTTQYNRTHDVLYAFYDCLCDQVRQEKFCSSVAPGFDTWEEAKSVYDMSVENISLNQWLNMWGRLCRGTAGISGFPIWVSLLGIIFFEVIDRDEDGLLEFDEIKNYYKGLVGVKEEDLYVVSKEGYRALTANEGYMLNKENYLFCFANFLLGRDIYGCGKYIFGVFDNREMTESYKIIYNEEDE