Scaffold Ga0193058_1000117

Overview

Basic Information

• Taxon OID: 3300018758
• Scaffold ID: Ga0193058_1000117
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002171 (ERX1782363-ERR1712059)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3292
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Pacific Ocean: TARA_135
• Coordinates
  • Lat. (^o): 33.0339
  • Long. (^o): -121.8782
  • Depth (m): 650

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000039	Metagenome / Metatranscriptome	4032	Y
F008249	Metagenome / Metatranscriptome	336	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193058_10001171	F008249	N/A	KRFALDSAKEDLAKRQEIYNKTKADLQRIYDKLQSDYQTMGLTLPEDKKKLLEKELAAVTEKMVILEKFGEKVKVIEDFCNNLELFDSTNKSLSNWMERAAGELDNIKHHCHQMVPEDRVAVCMELQEDIAAKVILIEESIAKEQELLPQGDSVPADALAHKAELERIHKFTLDLQQKVKQETANFSEDVKYWAEYRTGIREFEPWLQAAEEEATMGLGKPASLPEALALYDKISLFDKNCLRHKQVLEAAEAASLKMTTHQEADDQIAEMMGRYTKVKAVSDSWMSKVETLVKEWKLLDNTVTELNNWVAKDKTSEGENQFSLEKMESTLCELKNIFKEKEKLVENLDK
Ga0193058_10001172	F000039	AGCAG	LQRFSEITLFRLFPFTQALCKDLERAEVKKWLAQILEILMAERTKDQRNNENEKLEKTIKMHENLIPTVMKTQVMVDLYWKCYAYGDELKPHIEFLDGIMLSSTRDIAPSCVENVDELIERQEKSLTQLETKRAVVKDLIEKGKVLLQNPDKPKFLDSHVNRIADGWDDTKEKAQARLTLLNNTKAAWEGYAEGSIKMVEEFQKCEEETEKIKKKFNIEAAFEDLAKRQKIFKDTNASVNGTFKQLNADFQTMCLTLPEDKKEIIKKELRPIEEKLTIVSIFENKVKVIEDFCSSLKAFHDSLKSIDEWMIEAAKELDDIKNSSDKMTPEDRVSRTMDLQEDIAAKVEIIEKAVASELNLLPQGTEIPEDAQFYKDELKRIKEFVLDLQQKTRKECNNFAEDVKCWAEYRTGIKEFIPWLESAEKSSMEGLSKPSNLLEALVLQERVLGADNNCITHLKVLTAADAAAKKMTTHAEADTEVLELKVRYDKIKSVSDGWVAKVDNLVKEWKLLDNTVTELNTWVAKDKTHEGDNQFSLEKMESTLGELKNIFKQKEKLVEDL