Scaffold Ga0193147_1018001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193147_1018001

Scaffold Ga0193147_1018001

Overview

Basic Information
Taxon OID	3300018747 Open in IMG/M
Scaffold ID	Ga0193147_1018001 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_022 - TARA_A100000696 (ERX1782435-ERR1712076)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1147
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_022
Coordinates	Lat. (^o)	39.5705	Long. (^o)	17.4101	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193147_10180011	F035620	GAGG	MSYGSVIGRSGWSVVGSCLVVDKCRLGMSNMLVVDCSYRSCMMDLVVVGSYRGSDDGRLVAMADTSERATNSVGCVEIALRTDQGSQAGADKQDRLMTEHGCPSSNLNRLSNPH
Ga0193147_10180012	F014356	GGAG	VDYVEEPAEVCVPTLETKCDQEDGGQILELRTEEECQDVVRTVCVERHNVVDNEVCAYSYTLHPVPTEAKLVEPLWTEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCTVEKGEPGCQETLLQLPQQACLQKIERVNTVYTTPEKVSYSG

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