NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193468_1004219

Scaffold Ga0193468_1004219


Overview

Basic Information
Taxon OID3300018746 Open in IMG/M
Scaffold IDGa0193468_1004219 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_135 - TARA_N000002179 (ERX1789625-ERR1719155)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1834
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameNorth Pacific Ocean: TARA_135
CoordinatesLat. (o)32.9986Long. (o)-121.7698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011912Metatranscriptome285Y
F019775Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0193468_10042191F011912GGAGVRISDFYGQALNNGKWQFSESIDYLRQLGALDDSDPTNLRVIIPNYISGPSNCVASSAYYSVCCLDECEGILGKLEQLVAAPQAPSSTILNLVPQVASASMPSNRTLSPWLHHRLDEIAQHHNGLVPLHGRLFAQWLHYAYPRECTFPHAAGTIDPQRPEDLIITGSASEDDISANETVMKQVVADAAPVKHRVPGSETLAHEESAMWSMHEELVVWRPPNEPVGHWYFSTHSMKSMSGRMIAMLGAVLSLSFALVRSLEPALGNAQKGSAEKYYV
Ga0193468_10042192F019775N/APEIPPFFVVSSIRAIFHYLFKVQVTMASTSRALAFLLMIGSTSVAHGNTFLGRLPHQNATAALSAESERALLAELEVALGKGHRHATEKRLKRIEQMLSPMVGAVTKNEHGKLGSAGAGYVLHRVFVQRHGWFIRALEPTGNALAAWNTSNPVSILEERVPQHVQELFEKRLGSKGLGLKELAILAATLEHLVHTEALDRLKVAYTAKGLSQEDVLSDEEAIGVLDMYMSLYILGFLHSDLSTMSAEKAQELHANILELYPTWPETQQFLREVHRSVAPKRDYLYFNEIENVIAEIGERYGRFQDIECRQFKDWLVAI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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