Scaffold Ga0193425_1001712

Overview

Basic Information

• Taxon OID: 3300018743
• Scaffold ID: Ga0193425_1001712
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002293 (ERX1782423-ERR1712174)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1872
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_128
• Coordinates
  • Lat. (^o): 0.0078
  • Long. (^o): -153.6265
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058168	Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193425_10017121	F058168	N/A	LLFPTFVSLTTVRRKRHAEDDVNPMSDVVGRVNDIYSAVVQSEECMERIACEIGGLAADVGLTQSPAVKLAGGFVPSKYKNYYKQFASGKDCQKIKCGTFA