Scaffold Ga0193534_1000468

Overview

Basic Information

• Taxon OID: 3300018741
• Scaffold ID: Ga0193534_1000468
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_152 - TARA_N000002797 (ERX1789651-ERR1719275)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3221
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_152
• Coordinates
  • Lat. (^o): 43.7056
  • Long. (^o): -16.8794
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193534_10004681	F104391	N/A	NSDPLDQEAKMDLKDQMVSLDHLDQRDLLDTRDPLDWLVFLVSEVFPGLKVLRVEEVIQAFLDQLVLMAGQARGVNKVLLVPQDPLGRLEVLEIQGRQDLLENRVQLV
Ga0193534_10004683	F094857	GGA	VKLVARALPEPLACLGKRAQMDQGDPQAKEDHQELKVCQAWRVAREPLVLMDQTDRLDHLDLVGLLGIEEFLVFQALLAQLERQANKDHKEKGEILASQESKALRDHLGLLVLLGLLVSVVSEVRRVHQESRELQGWAAGLVTRVHLEQQE
Ga0193534_10004684	F085090	AGGAG	VCLDLLGWLASLDQLASLDPLVYRAALERLDHQDNPEPRAIVVSLVFRVFLDPLDHKDRRDLQAKMERMESQVQWAGAVLPDLMDPWVVWATLVLLDQEDHRARKAREVHLASLVLLGLLALQARAMEWTWLP