NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192974_1024485

Scaffold Ga0192974_1024485


Overview

Basic Information
Taxon OID3300018739 Open in IMG/M
Scaffold IDGa0192974_1024485 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001019 (ERX1789514-ERR1719246)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1039
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_085
CoordinatesLat. (o)-62.2024Long. (o)-49.2382Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068873Metagenome / Metatranscriptome124N
F099354Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0192974_10244851F068873GGAGGLDTADTGGSFNGGDHDVTLISPSWSPGVSDDVIVLSVFVSISDSGDGVIEVGSAGGGVKNTTGVTLESHLVGFNGNRDWSLGNSGHQLGGRVLLDVVIGGDEDLWGSFLEARSGVSGSGGVWVFSFGGLSVLLNVFHSFVLPSTLASIARGIAGNELLFGEGEEGTTFLNLLSRFHGGGG
Ga0192974_10244852F099354N/ALVLDWVDSSEGSPILGGWDSFGGENGGLLSRVVLESSETEKFLVFLMGPGGHEVGSDGEGVLWVGVDLGVFSGFGGEDVLSEHVFFLGSVGDTVLSDVLEEVGAGIKFILADIFESKGEGGFAERVHL
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