Scaffold Ga0193544_1006873

Overview

Basic Information

• Taxon OID: 3300018735
• Scaffold ID: Ga0193544_1006873
• Source Dataset Name: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001565 (ERX1399747-ERR1328127)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1092
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Atlantic Ocean: TARA_151
• Coordinates
  • Lat. (^o): 36.1715
  • Long. (^o): -29.023
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F031514	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193544_10068731	F001478	GGTGG	MFRRDGAFIVNEKGKVFDVQGGVDGENKNVMIYNKHGKLNQQWDIIYADEYPEEPKKGELNKRFGLYVERPFYVVSKLGSHRYLDLIGNRNMVIKTPNGRNTQVWWFDQKSLTIKTKLNNQSFDIT
Ga0193544_10068733	F031514	N/A	GKGELNEEFGLYVERPFHIVSALKDGRYLDLINNRNMVIKTANARNTQVWYFDQRSLTIKTKLNNQSFDITSSGRSNNMQVWSTNSNWW