Scaffold Ga0192964_1034353

Overview

Basic Information

• Taxon OID: 3300018717
• Scaffold ID: Ga0192964_1034353
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001362 (ERX1789634-ERR1719196)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1267
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: TARA_084
• Coordinates
  • Lat. (^o): -60.2584
  • Long. (^o): -60.6226
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008537	Metatranscriptome	331	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192964_10343531	F008537	GAG	MAVIRTMLFLCESMPIVFYLFTFGAFLIFININPTSAGTQSLKFNRSQFFDLTDPCSRTGEYNAVINKTHPASLLKLDIRYKTLVTYQTFDCVIKIKTEFGNKSRDYYNENEDIALMMFDINHGYRRKEDAIKLELVHIAKLDKNGTRFFYQKKKYQLPQYVPQSLPGYVMYGFEEIAQWHAESNSSVSVRLKRWKSSGSIYFVFAQYRIVSPYHCDTGIEVDCSDNSAVFAHCFPHTLLPLFLDGLPFCDFRPLHAIQSNRTTCSAPGISLPSYGSLLGMGILAQMWAAGAGTSIIQ