Scaffold Ga0193403_1018658

Overview

Basic Information

• Taxon OID: 3300018700
• Scaffold ID: Ga0193403_1018658
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_124 - TARA_N000002043 (ERX1789597-ERR1719175)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1038
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_124
• Coordinates
  • Lat. (^o): -9.1508
  • Long. (^o): -140.4969
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001979	Metatranscriptome	608	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193403_10186581	F001979	GAG	MSVTLRPNLNFATKADNTSVDWDELKGRLSSFQVDKLSYFFTQFFDHNQDGVIDSKDFAGLNERLRKVAGWDLDDPQYLAVCDNNRVFFECLLEQAYAERNTEGLEERTWEQALAPSKMVVDSVSLNSWLHMWARMCQGAAGIDDFPIWVQLIPRVIFNVICSREGGEVISRSSLRNFYENFTGLSGDTLDKVATEGFRSMTANGDYELDYSSYKLLFSNFLLGRTIYGPGKYVFGCFDNSDMTQKYKINYNA