NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192840_1039216

Scaffold Ga0192840_1039216


Overview

Basic Information
Taxon OID3300018686 Open in IMG/M
Scaffold IDGa0192840_1039216 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000593 (ERX1789430-ERR1719415)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)589
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_052
CoordinatesLat. (o)-16.953Long. (o)53.9825Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054572Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0192840_10392161F054572N/AGSEERTMPRPHIFLTNTCTPSPTAKLDPRYHPLGQPGPKHRGPVWICKIPTGLRLPAMVLSYCFITWNVRRFMFPHRCRTIHNVELPMHTEREVEGVWYERFRKQTDIYRWGHIYAAMQEKRIREAKKRGILPENYPENEEQLNRMDKATFEAMMPEVRKLKFEVDKDRIDGVCALRQKLPADHGLVME

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