NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188851_1019014

Scaffold Ga0188851_1019014


Overview

Basic Information
Taxon OID3300018682 Open in IMG/M
Scaffold IDGa0188851_1019014 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009844Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0188851_10190142F009844N/ATDKQVQLYENMADIRNQLSKAEEYSSEIPKKNDKKEKKTPPLAADWVKSNSTWFNKPGYRKETAMAYGIDAELTEEGWDVNDPGYYDEMDKRLKQTSLPYFSKKSEEDTSNSEKNVVQRTNRVQSPVAGVSRKKATDSNRVKLTSDDLATAKTFGIDINDEAALKRFAKEVKSFSTNT

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