Scaffold Ga0188851_1011396

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1011396
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1160
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009071	Metagenome / Metatranscriptome	323	Y
F020114	Metagenome / Metatranscriptome	226	Y
F020144	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_10113962	F020114	GGA	MKPQTFKHISRCIDKHGVHHLDALDERGHHWYATMQQKEEPWLTYVQHWELRTH
Ga0188851_10113963	F009071	GAG	MTPIFPDCYDEWGLYKITYDGDHKMYEMLFEGTEDECRQYAYDNYTDKEQTNMCLMDWEARDWDV
Ga0188851_10113966	F020144	N/A	MSKLTPSPYTLIPGTQVLRSKIDVFELYDEYEKKTHRVELSVDNDGVFITAVENCARENVSISHKDVAIVLARAILEAYGEV