NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188851_1007604

Scaffold Ga0188851_1007604


Overview

Basic Information
Taxon OID3300018682 Open in IMG/M
Scaffold IDGa0188851_1007604 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013186Metagenome / Metatranscriptome273N
F019139Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0188851_10076042F013186AGGAMKRALDSYINRAYPEVRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDTTNDEDKVKSYLLNTIKYQVLWSTSKSHKDDRVTAIIDSSGDRIEDDDLADKIREDKNYSFQKGVIEIYRAEIKDQVQKIVFEAYIDKGYTTSRALATYFDITHTSAYYLIKELKQNLNKLQYRYETEPSY
Ga0188851_10076044F019139N/AMKIKTEHLGKYITMYHGNFETSFTVTEETAKSHKYYTSKGLGYLFEESTPKAKYKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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