NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188851_1006574

Scaffold Ga0188851_1006574


Overview

Basic Information
Taxon OID3300018682 Open in IMG/M
Scaffold IDGa0188851_1006574 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1634
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022858Metagenome / Metatranscriptome212Y
F091975Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0188851_10065743F091975N/AMETQELIIAVATILGSGAAFKFYEYSIKTKRDAARELRQERRAENPETMFRDDLKKRVEEMSVALDSANLKILELTQKVAELETENRYLHREIDILKRK
Ga0188851_10065744F022858N/AMKQTLTTIKTNIKTILSFADSEFLELLIAVLHTFLLPLAVITEIGFKWHIVFAAFFGGLFQFYSVGMRNLKCRYYSTIIATIVAFLTTEEYIITGKMFEAPSRWGWAFISLAAIINQIRVTKQWKHKN

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