NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188851_1004231

Scaffold Ga0188851_1004231


Overview

Basic Information
Taxon OID3300018682 Open in IMG/M
Scaffold IDGa0188851_1004231 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2125
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054676Metagenome / Metatranscriptome139N
F054685Metagenome / Metatranscriptome139Y
F081060Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0188851_10042311F054685GGAMEYLCFFLESLERLLEQYRGLFEQVDEGNSGDESGDFGQRWGLFSIIEAMAKLHNISIEQTTKLGAIEFLNWWAYMVEKANYEKNAK
Ga0188851_10042312F081060N/AMQNKLHANLDKYWQTVVDDLVQSLKDVGRYASGNTAQAIGDGNAQPVVVTASGFKITIVMPNYYEFLDEGVSGAKNNTNISRFKYTNKMPPIKAIRRFMLNRGINAPRTSNTKSGKRQDAEKIRNGIAFAIARSIFNNGTKRTDFYTNVINDKKLLAFEQMLLTQYSDYVLEIIRAD
Ga0188851_10042313F054676AGGCGGMAITIQDQPTTTYIRPTFAPIEYLVSSDNTAQSGFKIVCKVYLNPSGANTLISTQQISVRPSTTQAILSIQDVVKSFVPITYSVPNGDTVGLITNALNEFRVTFQEYYSGALQGSVVTSNTISSLAASPKYIQFASNEWQDYQLATSYIERNLLSNFSNTIPVINAFSGANNWLKVKTDQKTQIQWAQSGATANFKVWLKTLNASFTQISLSQLDLGTTSKGYFALDIGRQEASAHAWDTPIVWTAAKYYAVAIYDESTTELVSNAYLYELDECDTNYTTYELHWLNRWGGFDSFVFDGKSNQTTEVNKTFAKYSPDRISGTSLNYSTYAQRTRAFNTATSESYSLNSRLLQDFEVSGLEDLVTSPEVY
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Institute for Fundamental Biomedical Research
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