Scaffold Ga0188851_1003835

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1003835
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2256
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025174	Metagenome / Metatranscriptome	203	N
F033361	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_10038353	F025174	GAGG	MSYFTDPMAALEEAAYMAKEEKRTMCVVEVEPNMIVVVSKKAAAELGGIILETCVPFEENHNIYD
Ga0188851_10038354	F033361	AGGAG	MLIKCNAIDHAYLIEDDPVRPKLFKDNSVRFEDPFHVYAEVNDETGEIAAVVCTIICKFVPQDEYQIKLIAMGKTERIEEQLKEREELHGELGTVLCPYSVWSYQRGHGRKLINNLLEAAPIMHPNVDAVITMSPHTDTAMRFHIHNGADIFSTSGECVNYEYEVPDVILH