Scaffold Ga0188851_1003054

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1003054
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2577
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F031662	Metagenome / Metatranscriptome	182	Y
F038411	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_100305410	F031662	AGGAG	MGFKIEKDVPVRRFTSPFCAALDQLEVGDSMPNLTKKEVYKYRVNFYTKHFKDRKFTFRKEKENSYRVWRLS
Ga0188851_10030545	F014903	AGGAGG	MSEDITKIHHVEMTFDHTIAFDIQEIANSNNFEIADIAEIECGKWAHLHITLKDGRVITEDGCNYGEVDMKWASAEYFYDKNYNEVAQ
Ga0188851_10030548	F038411	AGGAG	MTQHADKVEQVRRRNRLGAWRKGIKFMLGQAIDGGKDVMHTTIYNDDAQTIEYLKSDRKTEITPSPHSIDELVDMMMGSENAVAEAIIRKAGRNS