Scaffold Ga0188851_1002130

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0188851_1002130

Scaffold Ga0188851_1002130

Overview

Basic Information
Taxon OID	3300018682 Open in IMG/M
Scaffold ID	Ga0188851_1002130 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3201
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	56.1664	Long. (^o)	16.378218	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005899	Metagenome / Metatranscriptome	387	Y
F059468	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_100213011	F005899	N/A	MDSMENQHQIETIYQCPQCNSQGEVMIDEPRFKNIQKERDLLSVAHIRKLEEEIDMLRKQKIYLQSKLREKESN
Ga0188851_10021307	F059468	AGGA	MSRIMELERISREADELARQYNKTKDSGLRDQWYELIKKVSQVDPKDHLQDKQT

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