Scaffold Ga0188851_1001894

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1001894
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3432
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051922	Metagenome / Metatranscriptome	143	N
F065800	Metagenome / Metatranscriptome	127	N
F080086	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_10018942	F080086	N/A	MTNITAMEVSVEALEKECIMHDFTFMENPWRQRHWSREYDRRAKIFTILDRLGHSSKAIEVYNTYAPSFAKRPLRSTYY
Ga0188851_10018945	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPATTSTMLYGDSNLIQPQNEVI
Ga0188851_10018946	F065800	N/A	METKFIPTNPEELDSFESILKEFNIINDSAYVFTDSYDCDYDVYVGSESTADGYEIWIINVDHEGPILSENVYYYEPRAYDIFNHIGSGWRDDLVVYTELGLDEIEEYMIGKLCTNYDNYLSELEDAE