Scaffold Ga0188851_1000122

Overview

Basic Information

• Taxon OID: 3300018682
• Scaffold ID: Ga0188851_1000122
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16677
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (89.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 56.1664
  • Long. (^o): 16.378218
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029369	Metagenome / Metatranscriptome	188	Y
F058820	Metagenome / Metatranscriptome	134	Y
F092915	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188851_100012219	F029369	GGAGG	MIQVNKRKAVFSEIKGYCCHAGDNDYIEVTQWSNGEGYDICIDRKNGQEKFSLTFGEFDLLTVLMHWKSE
Ga0188851_100012228	F058820	AGGAGG	MDELNQLDYSEWLHWCGYTDAEMYSWPLDNDPAYMAGFAEGYAQIQMEGSYENFTS
Ga0188851_10001226	F092915	GAGG	MKAINNKKARDLILPIMALLFALLALGMAGDGDYQEAQDQATFYNEMVCKGAWPDYENRRPTCE